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Bioinformatics

Datasets commonly used by bioinformatics domains

Alphafold databases

infoDatasets used with Alpha Fold
folder_open/datasets/bio/alphafold/

Colabfold databases

infoDatasets used with ColabFold
folder_open/datasets/bio/colabfold/

dfam

infoOpen collection of Transposable Element DNA sequence alignments, hidden Markov Models (HMMs), consensus sequences, and genome annotations.
folder_open/datasets/bio/dfam/

Eggnog

infoA database of orthology relationships, functional annotation, and gene evolutionary histories.
folder_open/datasets/bio/eggnog-data/
folder_open/datasets/bio/eggnog6-data/

NCBI NT, NR, Eukaryotic, and Prokaryote databases

infoNCBI’s databases are downloaded weekly. See the full details for more information.
folder_open/datasets/bio/ncbi-db/

Tara Oceans

infoTara Oceans
folder_open/datasets/bio/tara-oceans/MGT-transcriptomes/
folder_open/datasets/bio/tara-oceans/MATOU-gene-catalog/
Last modified: Thursday, July 11, 2024 at 4:56 PM. See the commit on GitLab.
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