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Documentation

  • Requesting An Account
  • Cluster Specifications
    • Node Features (Constraints)
      • NVLink and NVSwitch
    • Node List
    • Partition List
      • Gypsum
    • Storage
  • Frequently Asked Questions
  • Connecting to Unity
    • SSH
    • Unity OnDemand
    • Connecting to Desktop VS Code
  • Managing Files
    • Command Line Interface (CLI)
    • Disk Quotas
    • FileZilla
    • Globus
    • Scratch: HPC Workspace
    • Unity OnDemand File Browser
  • Submitting Jobs
    • Batch Jobs
      • Array Batch Jobs
      • Large Job Counts
      • Monitor a batch job
    • Interactive CLI Jobs
    • Unity OnDemand
    • Slurm cheat sheet
  • Software Management
    • Conda
    • Modules
      • Module Usage
      • Module Hierarchy
    • Renv
    • Unity OnDemand
      • JupyterLab OnDemand
    • Venv
  • Tools & Software
    • ColabFold
    • R
    • Unity GPUs
  • Datasets
    • AI and ML
      • Code Llama
      • Imagenet
      • Imagenet 1K
      • LAION
      • Llama2
      • mixtral
    • Bioinformatics
      • Alphafold databases
      • Colabfold databases
      • dfam
      • Eggnog
      • NCBI NT, NR, Eukaryotic, and Prokaryote databases
      • Tara Oceans
  • HPC Resources
  1. Unity
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  5. Tara Oceans

Tara Oceans

Version: MGT
Path:/datasets/bio/tara-oceans/MGT-transcriptomes/
URL:https://www.genoscope.cns.fr/tara/localdata/data/
Downloaded:2023-02-06
Cite:Vorobev A, Dupouy M, Carradec Q, Delmont TO, Annamalé A, Wincker P, Pelletier E. Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics. Genome Research. 2020 Apr;30(4):647-659. doi: 10.1101/gr.253070.119. Available from: https://doi.org/10.1101/gr.253070.119. PubMed PMID: 32205368; PMCID: PMC7197479.
DOI:10.1101/gr.253070.119
Bibtex:
@article{vorobev2020transcriptome, title={Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics}, author={Vorobev, A and Dupouy, M and Carradec, Q and Delmont, TO and Annamalé, A and Wincker, P and Pelletier, E}, journal={Genome Research}, volume={30}, number={4}, pages={647--659}, year={2020}, month={Apr}, doi={10.1101/gr.253070.119}, url={https://doi.org/10.1101/gr.253070.119}, eprint={https://www.ncbi.nlm.nih.gov/pubmed/32205368}, pmid={32205368}, pmcid={PMC7197479}, }
Version: MATOU
Path:/datasets/bio/tara-oceans/MATOU-gene-catalog/
URL:https://www.genoscope.cns.fr/tara/localdata/data/
Downloaded:2023-02-24
Cite:Carradec Q, Pelletier E, Da Silva C, et al. A global ocean atlas of eukaryotic genes. Nature Communications. 2018;9:373. doi:10.1038/s41467-017-02342-1
DOI:10.1038/s41467-017-02342-1
Bibtex:
@article{carradec2018global, title={A global ocean atlas of eukaryotic genes}, author={Carradec, Q. and Pelletier, E. and Da Silva, C. et al.}, journal={Nature Communications}, volume={9}, pages={373}, year={2018}, doi={10.1038/s41467-017-02342-1} }
Last modified: Thursday, July 11, 2024 at 4:56 PM. See the commit on GitLab.
University of Massachusetts Amherst University of Massachusetts Amherst University of Rhode Island University of Rhode Island University of Massachusetts Dartmouth University of Massachusetts Dartmouth University of Massachusetts Lowell University of Massachusetts Lowell University of Massachusetts Boston University of Massachusetts Boston Mount Holyoke College Mount Holyoke College
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